Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLYTSYGTYGFLHQIKINNPTHQLFQFSASDTSVIFEETDGETVLKSPSIYEVIKEIGEFSEHHFYCAIFIPSTEDHAYQLEKKLISVDDNFRNFGGFKSYRLLRPAKGTTYKIYFGFADRHAYEDFKQSDAFNDHFSKDALSHYFGSSGQHSSYFERYLYPIKE
2BBE Chain:A ((8-87))
------------------------------------------------------------KINQQQIVCVASFLSKEGKTEALIAALASLIPDTRREAGCIRYEL-NVSRDEPRRVTF-------VEKFVDIAAFDEHCAKDAIQHYF-------------------
General information:
TITO was launched using:
RESULT:
Template:
2BBE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30152 for 498 contacts (-60.5/contact) +
2D Compatibility (PS) -8615 + (NN) -2576 + (LL) 5124
1D Compatibility (HY) -4800 + (ID) 1100
Total energy: -42119.0 ( -84.58 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_2BBE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BBE-query.scw
PDB file :
Tito_Scwrl_2BBE.pdb
: