Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ
3SJA Chain:C ((12-36))
---------------------VKERHELKEFNNSISAQDNYAKWTK----
General information:
TITO was launched using:
RESULT:
Template:
3SJA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 8902 for 100 contacts (89.0/contact) +
2D Compatibility (PS) -2793 + (NN) -3141 + (LL) 1012
1D Compatibility (HY) -400 + (ID) 300
Total energy: 3280.0 ( 32.80 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_3SJA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SJA-query.scw
PDB file :
Tito_Scwrl_3SJA.pdb
: