Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKKLLMNFFIVSPLLLATIATDFTPVPLSSNQIIKTAKASTNDNIKDLLDWYSSGSDTFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYWPKFDKKQLAISTLDFEIRHQLTQIHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN
2TSS Chain:A ((1-194))
----------------------------------------STNDNIKDLLDWYSSGSDTFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYWPKFDKKQLAISTLDFEIRHQLTQIHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN
General information:
TITO was launched using:
RESULT:
Template:
2TSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34424 for 1418 contacts (-24.3/contact) +
2D Compatibility (PS) -20735 + (NN) -10295 + (LL) 3408
1D Compatibility (HY) -23200 + (ID) 9700
Total energy: -94946.0 ( -66.96 by residue)
QMean score : 0.722
(partial model without unconserved sides chains):
PDB file :
Tito_2TSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2TSS-query.scw
PDB file :
Tito_Scwrl_2TSS.pdb
: