Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQL-STDINGIKLGSEIRKHDPVGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIMFFESSTKSHRLIAHLDNRQIEFYGNLKELSQLD---DRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI
4CBV Chain:A ((54-240))
------------------------------------------------------LYFLAIDIHGIEKKGFEVAQLIRHYNPYAIIVFITSRSEFATLTYKYQVSALDFVDKDINDEMFKKRIEQ-NIFYTKSMLLENEDVVDYFDYNYKGNDLKIPYHDILYIETTGVSHKLRIIGKNFAKEFYGTMTDIQEKDKHTQRFYSPHKSFLVNIGNIREIDRKNLEIVFYEDHRCPISRLKIRKL
General information:
TITO was launched using:
RESULT:
Template:
4CBV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111797 for 1247 contacts (-89.7/contact) +
2D Compatibility (PS) -19406 + (NN) -4504 + (LL) 4584
1D Compatibility (HY) -15200 + (ID) 2950
Total energy: -149273.0 ( -119.71 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_4CBV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CBV-query.scw
PDB file :
Tito_Scwrl_4CBV.pdb
: