Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVHVFDHPLIQHKLSYIRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPVTKMTAKRLAGKKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETLKAVEYFAKLPQDITERQIIVVDPMLATGASAIEAITSLKKRGAKNIRFMCLIAAPEGVEKMHEAHPDVDIYIAALDEKLNDKAYITPGLGDAGDRLFGTK
1V9S Chain:A ((2-208))
--RITLVDHPLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAPARVKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLY---------QYYIKLPPDIAERRAFLLDPMLATGGSASLALSLLKERGATGVKLMAILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK
General information:
TITO was launched using:
RESULT:
Template:
1V9S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169709 for 1593 contacts (-106.5/contact) +
2D Compatibility (PS) -21244 + (NN) -4124 + (LL) 796
1D Compatibility (HY) -20800 + (ID) 5850
Total energy: -220931.0 ( -138.69 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_1V9S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V9S-query.scw
PDB file :
Tito_Scwrl_1V9S.pdb
: