Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLDKNQLAKYKQDHLCEYEKIMSNNEKEALEEKVASLDLDFIAKLYNDLYINKKTIDDVSAVSEVKYDIKSQMSDDEIKRLEEQGLQAIKEGQFAVLLMAGGQGTRLGYKGPKGSFEI---EGVSLFELQANQLKTLN------HQSGHTIQWYIMTSDINHEETLAYFEAHSYFGYDQEAIHFFKQDNIVALSEEGKLILNQQGRIMETPNGNGGVFKSLDKAGYLEEMSNNGVKYIFLNNIDNVLVKVLDPLFAGFTVEHDYDITSKTIQ-PKPGESVGRLVNVDCKDTVLEYSELDPEVANQ--------FNNANIGIHAFKLGFILNAVN---RELPYHLAIKNLKQLDENFGVI--EQPT-LKFELFYFDIFTYGTSFVTLQVPREEEFSPLKNKE---GKDSVATATEDLRRMGLI |
| 1JV3 Chain:A ((85-428)) | ---------------------------------------------------------------------------DQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JV3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -114297 for 2525 contacts (-45.3/contact) +
2D Compatibility (PS) -35059 + (NN) -18523 + (LL) 6032
1D Compatibility (HY) -29600 + (ID) 6300
Total energy: -197747.0 ( -78.32 by residue)
QMean score : 0.418
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