Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIIIGSDEAGKRLKEVIKSYLLDNKYDVVDVTEGQEVDFVDATLAVAKDVQSQEGNLGIVIDAFGAGSFMVATKIKGMIAAEVSDERSGYMTRGHNNSRMITMGSEIVGDTLAKNVVKGFVEGKYDGGRHQIRVDMLNKMC
4LFM Chain:A ((21-162))
MDVIIGADKDGFAMKEQVKKYLEEHQYRVADVTPEPAEDFVESSLAVTKKLLNSDAHKAIMFDRYGVGSAMASNKVKGMVTAVVEEENTAHMTAEHNGAKAIAIGTGITGYDRALVIIQRYLDTEYAGGRHQIRLDMLEKMI
General information:
TITO was launched using:
RESULT:
Template:
4LFM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62812 for 1217 contacts (-51.6/contact) +
2D Compatibility (PS) -15226 + (NN) -8802 + (LL) 0
1D Compatibility (HY) -11600 + (ID) 2900
Total energy: -101340.0 ( -83.27 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_4LFM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LFM-query.scw
PDB file :
Tito_Scwrl_4LFM.pdb
: