Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLSRDYLEDDPEGFINFCHKRLL-FVDTKPNIVHDWIAKLERNQQSLGVITQNIDGLHSDAGSQHVDELHGTLNRFYCNACHKSYTKSDVIDRT----LKHCDNCGGAIRPDIVLYGEMLDQPTIIRALNKIEHADTLVVLGSSLVVQPAA--GLISHFKGDNLIIINKDRTPYDSDATLVIHDDMVSVVKSLMTE
2H4J Chain:A ((9-242))
----------LLNESRLTVTLTGAGISTPSGIPDF----------SQN------VFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEE
General information:
TITO was launched using:
RESULT:
Template:
2H4J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119507 for 1800 contacts (-66.4/contact) +
2D Compatibility (PS) -22850 + (NN) -3342 + (LL) 1276
1D Compatibility (HY) -22000 + (ID) 4600
Total energy: -171023.0 ( -95.01 by residue)
QMean score : 0.443
(partial model without unconserved sides chains):
PDB file :
Tito_2H4J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H4J-query.scw
PDB file :
Tito_Scwrl_2H4J.pdb
: