Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKELTMDGKHTVPYTISVDGITALHRTYFVFPENKKVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKKNDDAKNSIDPSTIKQIQIVVK
1YN5 Chain:A ((46-142))
--------------------------------------------QNVPYTIAVDGIMAFNQSYLNLPKDSQLSYLDLGNKVKALLYDERGVTPEKIRNAKSAVYTITWKDGSKKEVDLKKDSYTANLFDSNSIKQIDINVK
General information:
TITO was launched using:
RESULT:
Template:
1YN5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31651 for 631 contacts (-50.2/contact) +
2D Compatibility (PS) -10617 + (NN) -1285 + (LL) 2556
1D Compatibility (HY) -8800 + (ID) 2350
Total energy: -52147.0 ( -82.64 by residue)
QMean score : 0.683
(partial model without unconserved sides chains):
PDB file :
Tito_1YN5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YN5-query.scw
PDB file :
Tito_Scwrl_1YN5.pdb
: