Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFNQFENQNFFNGNPSDTFKDLGKQVFNYFSTPSFVTNIYETDELYYLEAELAGVNKEDISIDFNNNTLTIQATRSAKY--KSEQLILDE-RNFESLMRQFDFEA-VDKQHITASFENGLLTITLPKIKPSNETTSSTSIPIS
1SHS Chain:A ((46-135))
--------------------------------------SIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPK----------------
General information:
TITO was launched using:
RESULT:
Template:
1SHS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55310 for 500 contacts (-110.6/contact) +
2D Compatibility (PS) -9180 + (NN) 1050 + (LL) 1680
1D Compatibility (HY) -7600 + (ID) 1750
Total energy: -71110.0 ( -142.22 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_1SHS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SHS-query.scw
PDB file :
Tito_Scwrl_1SHS.pdb
: