Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLNNYSLKVKNKQLVDNCDLNFYLGQINHIVGKNGVGKSLLAK-----------DFLLNNSGNIPKSIS-----QNVTLISSSSNIPNDITKDFLL---------SLLKSKFENNRQTFDKIYNILNIEAIPS------NVLLKNLSDGQKQKLKLLSFLLEDHDLIILDEVTNALDKKTVNEIYEFLNDFIQSHQTKTIINITHNLSDLSALPGKYFIFKDLQIEEYQSKEEVINDYINL |
4RY2 Chain:A ((497-711)) | ----RYGLR---KPVLKNINLTIPKGKTVAIVGESGSGKTTLAKLLMNFYSPEKGDILIN--GHSIKNISLELIRKKIAFVSQDVFIFSGTVKENLCLGNENVDMDEIIKAAKMANAHDF--------IEKLPLKYDTFLNESGANLSEGQKQRLAIARALLKKPDILILDEATSNLDSITENHIKDAIYGL---EDDVTVIIIAHRLSTIVNCD-KIYLLKDGEIVESGSHTELI------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RY2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -40286 for 1294 contacts (-31.1/contact) +
2D Compatibility (PS) -19495 + (NN) -6133 + (LL) 1300
1D Compatibility (HY) -12400 + (ID) 3400
Total energy: -80414.0 ( -62.14 by residue)
QMean score : 0.426
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