Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKSKRLEIVSTIVKKHKIYKKEQIISYIEEYFGVRYSATTIAKDLKELNIYRVPIDCETWIYKAINNQTEQEMREKFRHYCEHEVLSSIINGSYIIVKTSPGFAQGINYFIDQLNIEEILGTVSGNDTTLILTASNDMAEYVYAKLFK
2P5M Chain:A ((27-81))
----------------------------------------------------------------------------------------------MIVLKTMPGNAQAIGALMDNLDWDEMMGTICGDDTILIICRTPEDTEGVKNRLLE
General information:
TITO was launched using:
RESULT:
Template:
2P5M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39471 for 359 contacts (-109.9/contact) +
2D Compatibility (PS) -6037 + (NN) -3944 + (LL) 8352
1D Compatibility (HY) -5200 + (ID) 1050
Total energy: -47350.0 ( -131.89 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_2P5M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P5M-query.scw
PDB file :
Tito_Scwrl_2P5M.pdb
: