Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIQDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYGTDES
3CIO Chain:A ((78-283))
--------------DNPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRASTA----------
General information:
TITO was launched using:
RESULT:
Template:
3CIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90943 for 1707 contacts (-53.3/contact) +
2D Compatibility (PS) -23285 + (NN) -19996 + (LL) 1408
1D Compatibility (HY) -12000 + (ID) 3100
Total energy: -147916.0 ( -86.65 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_3CIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CIO-query.scw
PDB file :
Tito_Scwrl_3CIO.pdb
: