Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELWPAIDLIGSTSVRLTEGKYDSEEKMSRSAEESIAYYSQFECVNRIHIVDLIGAKAQYAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASL---NVHAAIIGKAAHQASFWEGLE
2VEP Chain:A ((4-230))
-LELLPAVDVRDGQAVRLVHGESGTETSYGSPLEAALAW--QRSGAEWLHLVDLDAAFGTGDNRA-LIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGG-DLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAF-----
General information:
TITO was launched using:
RESULT:
Template:
2VEP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106324 for 1931 contacts (-55.1/contact) +
2D Compatibility (PS) -24215 + (NN) -8440 + (LL) 740
1D Compatibility (HY) -15200 + (ID) 3350
Total energy: -156789.0 ( -81.20 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_2VEP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VEP-query.scw
PDB file :
Tito_Scwrl_2VEP.pdb
: