Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKFVSSCIASTILFGTLLGVTYKAEAATVHVAGGVWSHGIGKHYVWSYYSHNKRNHGSTAVGKYSSFSGVARPGVQSKASAPKAWGGNKTFYSLH
3PMM Chain:A ((64-83))
---------------------------------AGWEWTHGVGLYGIYQYYQQ--------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3PMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -251 for 70 contacts (-3.6/contact) +
2D Compatibility (PS) -1904 + (NN) 1747 + (LL) 4244
1D Compatibility (HY) -1600 + (ID) 400
Total energy: 1836.0 ( 26.23 by residue)
QMean score : -0.625
(partial model without unconserved sides chains):
PDB file :
Tito_3PMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PMM-query.scw
PDB file :
Tito_Scwrl_3PMM.pdb
: