Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKEKSLELPLGHPLVEKLCELSLNNKAAFNEKSEPNFKDEVSEEDKIKFKQALRVFHAIVNNETSLRYLSD----ENQKFL---EDLAQAKKITNEQIEKTLEIVSDSDVDVDFEKLKKLMLNVDSVAVGLKSYSQNQLLDLDGGHWDL
3GHG Chain:C ((71-145))
------------------------------DESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDITGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNG
General information:
TITO was launched using:
RESULT:
Template:
3GHG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11371 for 233 contacts (48.8/contact) +
2D Compatibility (PS) -7383 + (NN) -6241 + (LL) 2348
1D Compatibility (HY) -4400 + (ID) 950
Total energy: -5255.0 ( -22.55 by residue)
QMean score : 0.398
(partial model without unconserved sides chains):
PDB file :
Tito_3GHG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GHG-query.scw
PDB file :
Tito_Scwrl_3GHG.pdb
: