Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLGLVLLYVGIVLISNGICGLTKVDPKSTAVMNFFVGGLSIVCNVVVITYSALHPTAPVEGAEDIVQVSHHLTSFYGPATGLLFGFTYLYAAINHTFGLDWRPYSWYSLFVAINTVPAAILSHYSDMLDDHKVLGITEGDWWAIIWLAWGVLWLTAFIENILKIPLGKFTPWLAIIEGILTAWIPAWLLFIQHWV
3UX4 Chain:B ((1-195))
MLGLVLLYVGIVLISNGICGLTKVDPKSTAVMNFFVGGLSIVCNVVVITYSALHPTAP---------------SFYGPATGLLFGFTYLYAAINHTFGLDWRPYSWYSLFVAINTVPAAILSHYSDMLDDHKVLGITEGDWWAIIWLAWGVLWLTAFIENILKIPLGKFTPWLAIIEGILTAWIPAWLLFIQHWV
General information:
TITO was launched using:
RESULT:
Template:
3UX4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143321 for 1341 contacts (-106.9/contact) +
2D Compatibility (PS) -17525 + (NN) 808 + (LL) 1292
1D Compatibility (HY) -37200 + (ID) 9000
Total energy: -204946.0 ( -152.83 by residue)
QMean score : 0.207
(partial model without unconserved sides chains):
PDB file :
Tito_3UX4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UX4-query.scw
PDB file :
Tito_Scwrl_3UX4.pdb
: