Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKVNFFATCLGAAIYSNASLNAIKLLRKENLEVVFKKDQ--TCCG--------------QPSYNSGYYEETKKVVLYNIKLYSNNDYPIILPSGSCTGMMRHDYLELFEGHAEF--------NMVKDFCSRVYELSEFLDKKLQVKYEDKGEPLKITWHSNCHALRVAKVIDSAKNLIRQLKNVELIELEKEEECCGFGGTFSVKEPEISAVMVKEKIKDIESRHVDVIVSADAGCLMNISTAMQKMGSLTKPMHFYDFLASRLGL |
2CFV Chain:A ((17-134)) | ----------------NLYFQSMKLIRVENFEAYFKKQQADSNCGFAEEYEDLKLVGISQPKYAAELAENRGKNRYNNVLPYDISRVKLSVQTHSTDDYINANYMPGYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIIMLTEYWPSAQDYGDITVAMTSEIVLWTIRDFTVKNIQESHPLRQFHFTTTDLLINFRYLVRDYPILVHCSAGVGRTGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCV |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CFV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 11436 for 466 contacts (24.5/contact) +
2D Compatibility (PS) -9537 + (NN) 822 + (LL) 1460
1D Compatibility (HY) -6400 + (ID) 1450
Total energy: -3669.0 ( -7.87 by residue)
QMean score : -0.189
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