Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLNGLAGNLLIVVILLCVVVFFALKAIHIQKEQATNYYRYKDINALEAKNTQNHANYELVNQGSKK
2KNC Chain:B ((694-718))
----LVVLLSVMGAILLIGLAALLIWKLL---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2KNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14183 for 93 contacts (-152.5/contact) +
2D Compatibility (PS) -2556 + (NN) -2844 + (LL) 3124
1D Compatibility (HY) -2800 + (ID) 100
Total energy: -19359.0 ( -208.16 by residue)
QMean score : 0.341
(partial model without unconserved sides chains):
PDB file :
Tito_2KNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KNC-query.scw
PDB file :
Tito_Scwrl_2KNC.pdb
: