Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIVVTITSGKGGVGKSTTTANLAIGLAESGKKVVAVDFDIGLRNLDMILGLENRIVYDVVDVMEKNCNLSQALITDKKTKNLSFLAASQSKDKNILDKEKVAILINALRA-DFDYILIDSPAGIESGFEHAILHADMALVVVTPEVSSLRDSDRVIGIIDAKSNRAKSGEE-VHKHLIINRLKPELVANGEMISIEEVLKILCLPLIGIIPEDHHIISATNKGEPVI-RTDCESAKAYQRITRRILGEEVEYVEFKAKRGFFSALKGIFS
3R9J Chain:A ((2-253))
-ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILAS-------GEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDINADAGKAYADTVERLLGEERPFRFIEE-------------
General information:
TITO was launched using:
RESULT:
Template:
3R9J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -185600 for 2079 contacts (-89.3/contact) +
2D Compatibility (PS) -26191 + (NN) -8851 + (LL) 1628
1D Compatibility (HY) -24400 + (ID) 6200
Total energy: -249614.0 ( -120.06 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_3R9J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R9J-query.scw
PDB file :
Tito_Scwrl_3R9J.pdb
: