Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIRTPKHLTKQESVNLGAYYTPPYLVDCAYKLLKKHVGIENYTLLDTACGNKEFLKLHHPKK------IGADIDPKCDALIINALANPKRENYGISQD----EPL----IIVGNPPYNDRTSFIKQDIKNKDFIFEIDNDLKSR---------DLGISFL-KSFAILKPAFICV-LHPLSYLIKEANFKQLKLFKDHYRLLDAFVVSSKSFTKSNEFPIVIALYERGRMDYAGIRRFVFPTDCDTTLCLNDFDYIANYVDKYPNAKKVGACVGYFFPMRDINALKRNKTFLNAPSENAVRISQDKLIYYQYIHYFKEIAPKIPYYFGNLDIIIDHFAFLEIKDAFLKDKRARLEYFKKLFQGHPCEFD |
| 2JG3 Chain:A ((23-180)) | --------------------TPPEVVDFMVSLAEAPRGGR---VLEPACAHGPFLRAFREAHGTAYRFVGVEIDPK--ALDLPPWAE------GILADFLLWEPGEAFDLILGNPPYG----IVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLE-DFALLREFLAREGKTSVYYLGEVFPQKKVSAVVIRFQKSGKGLSLWDTQESESGFTPILWAEYPHWEGEIIRFETEETRKLEISGMPLGDLFHIRFAARSPEFKKHPAVRKEPGPGLVPVLTGRNLKPGWVDYEKNHSGLWMPKERAKELRDFYATPHLVVAHTKGTRVVAAWDERAYPWRE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2JG3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -38985 for 867 contacts (-45.0/contact) +
2D Compatibility (PS) -13609 + (NN) -1689 + (LL) 1840
1D Compatibility (HY) -10800 + (ID) 2450
Total energy: -65693.0 ( -75.77 by residue)
QMean score : 0.320
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