Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVLIINGAKAFGHSGGKLNETLTHHAKKILESLGLEVDTTIVDKGYEKSQEVEKFFSADATIWQMPGWWMGEPWIVKKYIDEVFTSGHGKLYASDGRSSQNPTKNYGKGGLMQGKKYMLSLTWNAPIEAFNDPSEFFEGVGVDVVYLHLHKAFQFLGLSALPTFICNDVMKNPQVEQYLNSLTVHLRQAFGK
2AMJ Chain:A ((15-204))
---ILIINGAK------GQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGR-------KYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGMEPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG-
General information:
TITO was launched using:
RESULT:
Template:
2AMJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17329 for 1284 contacts (-13.5/contact) +
2D Compatibility (PS) -18177 + (NN) -6079 + (LL) 420
1D Compatibility (HY) 5600 + (ID) 1850
Total energy: -37415.0 ( -29.14 by residue)
QMean score : 0.250
(partial model without unconserved sides chains):
PDB file :
Tito_2AMJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AMJ-query.scw
PDB file :
Tito_Scwrl_2AMJ.pdb
: