Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGNEP--FAVILADDLCISHEYPSVLKQMTSLYQKYQCSIVAIEEVVLEEVSKYGV--IRGEWLEERVYEIKDMVEKPSQEDAPSNLAVIGRYILTPDIFDILRETKPGKNNEIQITDA---LLTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKKRL |
| 2PA4 Chain:A ((12-276)) | -VKTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMERGKTDQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLVLPT---GVMERMAQVRAEFGGSVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQ--GKRHDLGNPGGYIPACVDFGLSHP |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PA4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -168609 for 2114 contacts (-79.8/contact) +
2D Compatibility (PS) -27544 + (NN) -5702 + (LL) 460
1D Compatibility (HY) -15600 + (ID) 5300
Total energy: -222295.0 ( -105.15 by residue)
QMean score : 0.448
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