Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVITDLDKALSGLKDGDTILVGGFGLCGIPEYAIDYIYKKGIKDLIVVSNNCGVDDFGLGILLEKKQIKKIIASYVGENKIFESQMLNGEIEVVLTPQGTLAENLRAGGAGIPAYYTPTGVGTLIAQG------------------KESREFNGKEYILERAITGDYGLIKAYKSDTLGNLVFRKTARNFN-PLCAMAAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEKRIEKTTTRSAK
3DLX Chain:A ((2-247))
-TKFYTDPVEAVKDIPDGATVLVGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENAEFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSVAIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCK-AAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIRKPG
General information:
TITO was launched using:
RESULT:
Template:
3DLX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118063 for 1916 contacts (-61.6/contact) +
2D Compatibility (PS) -24490 + (NN) -9701 + (LL) 416
1D Compatibility (HY) -24000 + (ID) 7000
Total energy: -182838.0 ( -95.43 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_3DLX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DLX-query.scw
PDB file :
Tito_Scwrl_3DLX.pdb
: