Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDFKVPPKAKGFKRLFKALFYSKDGLKCAWAEESAFRQIVILALFCIVLASYLTKDFLEWGLLILPCFLSVVIELINSSIEKAVDFTGTEFHPLAKKAKDMASSAQLIGLIFWAFIWGRYLLTLYFN
4BRB Chain:A ((15-121))
-----------GFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLCVVIAAWLDVDAVTRVLLISSVMLVMIVELLNSAIEAVVDRIGSEYHELSGRAKDLGSAAVLIAIIDAVITWAILLWSHF--
General information:
TITO was launched using:
RESULT:
Template:
4BRB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50966 for 599 contacts (-85.1/contact) +
2D Compatibility (PS) -11510 + (NN) -7707 + (LL) 412
1D Compatibility (HY) -10400 + (ID) 2350
Total energy: -82521.0 ( -137.76 by residue)
QMean score : 0.325
(partial model without unconserved sides chains):
PDB file :
Tito_4BRB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BRB-query.scw
PDB file :
Tito_Scwrl_4BRB.pdb
: