Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIFLSCKSLLIQRSLEFYLSDCLSPVEVCDLVLSDDEKLETNKPLCFIEER--LRKPFTKQSVKEDIKNFYRALKISEKPCEEIQFSKEQKIKQLLEEYTHKLCQIISQ
1GKU Chain:B ((744-800))
------------------------------DLVLEHDEE-EFDLTIKLVEEREELRTPLPPYTTETMLSDANRILKFSVK--QTMQIAQELFENGLITYHRTDSTRVSDV
General information:
TITO was launched using:
RESULT:
Template:
1GKU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11872 for 213 contacts (55.7/contact) +
2D Compatibility (PS) -5642 + (NN) 2390 + (LL) 2872
1D Compatibility (HY) -3600 + (ID) 1000
Total energy: 6892.0 ( 32.36 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_1GKU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GKU-query.scw
PDB file :
Tito_Scwrl_1GKU.pdb
: