Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVYPQVLSIAGSDSGGGAGIQADLKAFQTFGVFGTSVITCITAQNTQGVHGVYPLSVESVKAQILAIRDDFSIKAFKMGALCNAQIIECVANALETCDFGLCVLDPVMVAKNGALLLEEEAILSLKKRLLPKTNLLTPNLPEVYALTGVQARDDKSASKAMGVLRDLGVKNAVIKGGHTEHFQGEFSNDWVFLEDAEFILSAKRFNTKNTHGTGCTLSSLIVGLLAQGLDLKNAITKAKELLTIIIQNPLNIGHGHGPLNLWSIKKHV
4JJP Chain:A ((12-248))
-------LTIAGSDSSGGAGIQADLKTFSAIGTYGMSVITAITAQNTKGVFAVEDLNKKIIKKQIEAVFEDIPPRAVKIGMVSSPEIILEIVENLKKYNPKYLVVDPVMISKSGYYLLKPEAKENLIKYLIPLAYIITPNIPEAEEITGIKIHNVDDMKRVGEEILQLGPKFVLMKGG---HLDGE-AVDILVGKNIFKVYKSE----------GCTLSSAITSYLALGYEITEAVNLSKIYITEAIK---------------------
General information:
TITO was launched using:
RESULT:
Template:
4JJP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170593 for 1933 contacts (-88.3/contact) +
2D Compatibility (PS) -24509 + (NN) -7645 + (LL) 1704
1D Compatibility (HY) -16800 + (ID) 4550
Total energy: -222393.0 ( -115.05 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_4JJP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JJP-query.scw
PDB file :
Tito_Scwrl_4JJP.pdb
: