Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVLEVKNLSFKYSQKLILDKLSFSVPKNSITSILAPNGSGKTTLLKCLLGLL-------KPLEETEIKACNKDILPLKPYEKAKLIAYIPQVEYYAFNFSVLDFVLMGKATHLNLFAMPKAKHIKEATSVLERLDLESLKDQGINDLSGGQRQMVLLARSLLQRTPLLLLDEPTSALDLKNQALFFDAIKDEMKKRELSVLVNIHDPNLVARHSTHVVMLKDKKLFLQASTPIAMTSHNLSALYDTPLEAIWHDDKLVVYAL
4HZI Chain:A ((34-277))
-LLSLEKISYKPTGKTILDSVSFEIKTNEHCVLLGRNGAGKSTLVNLIYGMIWATSGTIRLFQETYGEIAIQDLR-----KRIGILDSSQ------RKLTVKDTILTGLFHTIGYYRDPSPEEETKTLQILKDSDLLSKKDQLYNTLSSGEKKKILFLRSIVNEPDFLIMDEPCSSLDLTAREDFLGFLKEYHSKKKFTSLYITHRPEEIPDFYSKAVLLKEGKVIHFGPIEECFTEKNLEDLYDIPLQVQRIENTWSVIPK
General information:
TITO was launched using:
RESULT:
Template:
4HZI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126865 for 1731 contacts (-73.3/contact) +
2D Compatibility (PS) -24518 + (NN) -7259 + (LL) 1004
1D Compatibility (HY) -15200 + (ID) 3300
Total energy: -176138.0 ( -101.76 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_4HZI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HZI-query.scw
PDB file :
Tito_Scwrl_4HZI.pdb
: