Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCGVLSLQARLSFENCSKPLDCSLFATTCTPQNPIGSCMVSSQGGVCGVLSLQARLSFENCSKPLDCSLFATTCTPQNPIGSCMVSSQGGVRGVLSLQARLSFKNCFLVKSLKPSQLTLMLTGFLGGFSFLTTGFW
3VYS Chain:B ((335-360))
------------------PTDCPLFGKTCTPRHPVGPCMVSYEGTCQIFYKYGVL---------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VYS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13289 for 126 contacts (-105.5/contact) +
2D Compatibility (PS) -2799 + (NN) -3353 + (LL) 6164
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -16877.0 ( -133.94 by residue)
QMean score : 0.245
(partial model without unconserved sides chains):
PDB file :
Tito_3VYS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VYS-query.scw
PDB file :
Tito_Scwrl_3VYS.pdb
: