Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMFELTKKTKFDGEMIGYTEELLTFLV----RDFFNGIFKSKVIPKMPIFCGDVKCEDFNALRSLVYLSVLELEETINPNKIPF
4K87 Chain:A ((440-479))
------------------SEDLKTHMVVANTMEDFQKILDSGKIVQIP-FCGEIDCEDWIKKTTARDQSMGAKSLCIPFKPLCE
General information:
TITO was launched using:
RESULT:
Template:
4K87.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15180 for 148 contacts (-102.6/contact) +
2D Compatibility (PS) -3992 + (NN) -2647 + (LL) 1648
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -24521.0 ( -165.68 by residue)
QMean score : 0.085
(partial model without unconserved sides chains):
PDB file :
Tito_4K87.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K87-query.scw
PDB file :
Tito_Scwrl_4K87.pdb
: