Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGFQNENKLKVGASVKATIN-DKVVEAKVISIG-FNRVTLRSEKGQRSHLRFQ
2XDP Chain:A ((61-104))
----KLGPPAEGEVVQVKWPDGKLYGAKYFGSNIAHMYQVEFEDGSQIAMKRE
General information:
TITO was launched using:
RESULT:
Template:
2XDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2572 for 145 contacts (-17.7/contact) +
2D Compatibility (PS) -4640 + (NN) -944 + (LL) 288
1D Compatibility (HY) -1600 + (ID) 350
Total energy: -9818.0 ( -67.71 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_2XDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XDP-query.scw
PDB file :
Tito_Scwrl_2XDP.pdb
: