Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNLINEKLNNLENSATKSPKEAVVLLNMGGPNSLYEVGVFLKNMFDDPFILTIKNNFMRKMVGKMIVNSRIEKSKKIYEKLGGKSPLTPITF----ALTERLNELDPSRF---YTYAMRYTPPYASMVLQDLALKEIESLVFFSMYPQYSSTTTLSSFNDAF---NALKSLETFRPKVRVIERFYADKKLNEIILNTILSALNNC---KSQDFVLIFSVHGLPKSIVDAGDTYQQECEHHVSLLKELMQQKNIPFKEVLLSYQSKLGPMKWLEPSTEE----LIEKHRKSNIIIYPLAFTIDNSETLYELDMQY-RLMAERLAVKEYLVCPCLNDSIEFAKFIIELVKNLKSE |
| 3HCP Chain:A ((1-321)) | ----------------RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP---IQNKLAPAIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTM--KWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCN-PYR---LVWQSKVGPMPWLGPQTDESIKGLCERGRK-NILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3HCP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -161149 for 2434 contacts (-66.2/contact) +
2D Compatibility (PS) -32414 + (NN) -13765 + (LL) 1560
1D Compatibility (HY) -24400 + (ID) 5500
Total energy: -235668.0 ( -96.82 by residue)
QMean score : 0.492
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