Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPHINAKIGDFYPQCLLCGDPLRVSYIAKNFLQDAKEITNVRNMLGFSGKYKGKGISLMGHGMGIASCTIYVTELIKTYQVKELLRIGTCGAISPKVGLKDIVMATGASTDSKTNRVRFLNHDLSATPDFELSLRAYQTAKRLGIDLKIGNVFSSDFFYSFETHAFGLMAQYNHLAIEMEAAGLYATAMELNAKALCLCSVSDHLITKEALSPKERIESFDNMITLALEMMS
1PR2 Chain:A ((3-231))
-TPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALGIDARVGNLFSADLFYSPDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALESVL
General information:
TITO was launched using:
RESULT:
Template:
1PR2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -183206 for 1965 contacts (-93.2/contact) +
2D Compatibility (PS) -23911 + (NN) -4511 + (LL) 208
1D Compatibility (HY) -24000 + (ID) 6200
Total energy: -241620.0 ( -122.96 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_1PR2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PR2-query.scw
PDB file :
Tito_Scwrl_1PR2.pdb
: