Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRSPNLEKEETEIIETLLVREKMRLCPLYWRILAFLIDSLLVAFLLSDLLRACAFLHSLYWLTNPIYYSAFVVMGFIILYGVYEIFFVCLCKMSLAKLVFRIKIID---IYLADC--------PSRAILLKRLGLKIVVFLCP-FLWFVVFKNPYHRAWHEEKSKSLLVLF
4G3J Chain:A ((5-94))
----------------------------------------------------------------PVYPVTVPILGHIIQFGKSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPR---EVYSFMVPVFGEGVAYAAPYPRMREQLNFLAEELTI
General information:
TITO was launched using:
RESULT:
Template:
4G3J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57479 for 416 contacts (-138.2/contact) +
2D Compatibility (PS) -7506 + (NN) 4161 + (LL) 6940
1D Compatibility (HY) -4800 + (ID) 1200
Total energy: -59884.0 ( -143.95 by residue)
QMean score : 0.071
(partial model without unconserved sides chains):
PDB file :
Tito_4G3J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G3J-query.scw
PDB file :
Tito_Scwrl_4G3J.pdb
: