Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVEIENLTKTYGSLKALDNISLKLPKQQFIGLLGPNGAGKTTLLKILAGLNLNYQGEVKILNQKIG---IETKKSVAFLSDGDFLDPKLTPLKAIAFYKDFFS---------------DFDESKALNLLKRFSVPLKREFKALS--KGMREKLQLILTLSRNASLYLFDEPVAGIDPIAREEIFELIAKEFSQNASLLVSTHLVVDVEKYLDSAIFLKEAKVVAFGDVGELKKGYSSLEAAYKERLK
4WBS Chain:A ((42-265))
----VRNLKKRYGSRTVVKDVSLDVKSGEVVGLLGPNGAGKTTSFYMIVGLVPLDAGEIDLDGKSISLLPIHKRASLGL----SYLPQEASVFRKLSVEENIRAVLELQVGDDGKRLSKDAIASRTEALLDELQISHLRENPALSLSGGERRRVEIARALATNPSFILLDEPFAGVDPIAVLEIQKIVKFLKQRNIGVLITDHNVRETLGICDHAYIISDGSVLAAGAPGDIIENESVRRVYLGEHFR
General information:
TITO was launched using:
RESULT:
Template:
4WBS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111042 for 1586 contacts (-70.0/contact) +
2D Compatibility (PS) -21362 + (NN) -3992 + (LL) 580
1D Compatibility (HY) -14000 + (ID) 3200
Total energy: -153016.0 ( -96.48 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_4WBS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WBS-query.scw
PDB file :
Tito_Scwrl_4WBS.pdb
: