Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVIVALGVLAFANVLMATDVKALVKGCAACHGVKFEKKALGKSKIVNMMSEKEIEEDLMAFKSGA---NKNPVMTAQAKKLSDEDIKALAKYIPTLK
1E08 Chain:E ((1-78))
--------------------DGAALYKSCIGCHGADGSKAAMGSAKPVKGQGAEELYKKMKGYADGSYGGERKAMMTNAVKKYSDEELKALADYMSKL-
General information:
TITO was launched using:
RESULT:
Template:
1E08.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27761 for 506 contacts (-54.9/contact) +
2D Compatibility (PS) -8179 + (NN) -3262 + (LL) 2616
1D Compatibility (HY) -4000 + (ID) 1400
Total energy: -41986.0 ( -82.98 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_1E08.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1E08-query.scw
PDB file :
Tito_Scwrl_1E08.pdb
: