Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFGVFGNPIKHSKSPLIHNACFLTFQKELGFLGHYHPILLPLESRIKNEFLHLGLSGANVTLPFKERAFQICDKIKGIALECASVNTLVLENDELVGYNTDALGFYLSLKHQNYQNDQNALILGAGGSAKALACGLQKQGLKVSVLNRSARGLDFFQRLGCDCFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKESKLAYDLAYGFLTPFLSLAKELKIPFQDGKDMLIYQASLSFEKFSDSQIPYSKAFEVMRSVF
3PHH Chain:A ((1-263))
MKLKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVCDKIKGIALECGAVNTLVLENDELVGYNTDALGFYLSLK---YQN---ALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGFLTPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVF
General information:
TITO was launched using:
RESULT:
Template:
3PHH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -206084 for 2348 contacts (-87.8/contact) +
2D Compatibility (PS) -27208 + (NN) -6320 + (LL) 48
1D Compatibility (HY) -40400 + (ID) 12300
Total energy: -292264.0 ( -124.47 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_3PHH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PHH-query.scw
PDB file :
Tito_Scwrl_3PHH.pdb
: