Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTEMKSFLKLFAQPLLVVLAFMLLYALAHAVLGFYVKKDSAPMSPNVEKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTATQKQEIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKIIGSLIKNKSVKVLEIQNDWAEIEF--SHETKGYVFLKLLKKAE |
2KT8 Chain:A ((11-56)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------SSLNVREGASTSSKVIGSLSGNTKVTIVGEEGAFYKIEYKGSH---GYVAKEYIKDIK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KT8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -14632 for 235 contacts (-62.3/contact) +
2D Compatibility (PS) -4680 + (NN) 1122 + (LL) 12604
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -10586.0 ( -45.05 by residue)
QMean score : 0.386
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