Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQAIYNETKDLMQKSIQALNRDFSTLRSAKVSVNILDHIKVDYYGTPTALNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDAILKV
3J0D Chain:J ((3-184))
-LKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQEILG-
General information:
TITO was launched using:
RESULT:
Template:
3J0D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25529 for 1245 contacts (-20.5/contact) +
2D Compatibility (PS) -19745 + (NN) -8370 + (LL) 272
1D Compatibility (HY) -12400 + (ID) 3750
Total energy: -69522.0 ( -55.84 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_3J0D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J0D-query.scw
PDB file :
Tito_Scwrl_3J0D.pdb
: