Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVSQYLYQNAQSIWGDCISHPFVQGIGRGTLERDKFRFYIIQDYLFLLEYAKVFALGVVKACDEAVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSIKEVAVAVLACGWSYLVIAQNLSQIPNALEDAFYGHWIKGYSSKEFQACVTWNINLLDSLALASSKQEIEKLKEIFIATSEYEYQFWDMAYQS
1YAF Chain:A ((2-214))
-KFSEECRSAAAEWWEGSFVHPFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRMASHAQGTYEAEMALHREFAELLEISEEERKAFKPSPTAYSYTSHMYRSVLSGNFAEILAALLPCYWLYYEVGEKLLHCDPG--HPIYQKWIGTYGGDWFRQQVEEQINRFDELAENSTEEVRAKMKENFVISSYYEYQFWGMAYRK
General information:
TITO was launched using:
RESULT:
Template:
1YAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139552 for 1680 contacts (-83.1/contact) +
2D Compatibility (PS) -22654 + (NN) -7880 + (LL) 488
1D Compatibility (HY) -14000 + (ID) 3650
Total energy: -187248.0 ( -111.46 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_1YAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YAF-query.scw
PDB file :
Tito_Scwrl_1YAF.pdb
: