Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWVEDNPNDGSKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSLEIQRLQLEIGGLRGVKFAKLTKASSFEYNE
2WVD Chain:A ((6-141))
-----KDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWA---PNDESKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLSTTHIHMDEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKLTKA-------
General information:
TITO was launched using:
RESULT:
Template:
2WVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43828 for 785 contacts (-55.8/contact) +
2D Compatibility (PS) -15265 + (NN) -9906 + (LL) 208
1D Compatibility (HY) -18000 + (ID) 6450
Total energy: -93241.0 ( -118.78 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_2WVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WVD-query.scw
PDB file :
Tito_Scwrl_2WVD.pdb
: