Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRFGLNIDHIVTLREVRKTYEPEILEALFIAKNTHKVDLITIHLREDKRHIQNEDVLRLLEISPLPINIECSINAEITDFLCSLKNKPSKVTIVPENRNEVTTEGGLDCSLK--GLEEVIRAYHNKGIEVSLFVDPLKDALHFAKEHQVKQVEFHTGVYANLHNALYSNANNQIHAISTLKDKCPKELKEELHNAFLQLRRMSKEAFF---MGIVVCAGHGLNYSNVKELLKIPSLRELNIGHSVVSKAVLVGLEKAILEMAQLIKR
1HO1 Chain:A ((6-238))
--LGVNIDHIATLRNARGTAYPDPVQAAFIAEQA-GADGITVHLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEM--LAIAVETKPHFCCLVPE-------EGGLDVAGQRDKMRDACKRLADAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTGCYADA--------------------KTDAEQAQELA-------RIAKAATFAASLGLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRLMLE
General information:
TITO was launched using:
RESULT:
Template:
1HO1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169699 for 1938 contacts (-87.6/contact) +
2D Compatibility (PS) -24397 + (NN) -15977 + (LL) 2592
1D Compatibility (HY) -14800 + (ID) 4650
Total energy: -226931.0 ( -117.10 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_1HO1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HO1-query.scw
PDB file :
Tito_Scwrl_1HO1.pdb
: