Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LYQMKNKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNELWIPHYENPVSWPVG---GELK---PDG-EHWTFTAEAINIATTFLKSEGIELTPVKMIIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLV---VQGNGSCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVPTFSVGWTGTPVSTGKLVSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFHTKDEELLYSAIKENRRILQELGTKAGVNIETSLLKELADSAENMGGAGKSSGSGGGDCGIAFSKTKELAEKLVNEWEKLGIKHLPFHTGRVQITE |
| 1VIS Chain:A ((3-285)) | -------LIIETPSKVILFGEHAVV-YGYRAISMAIDLTSTIEIKETQEDEIILNL--NDLNKSLGLNLNEIKNINPNNFGDFKYCLCAIKNTLDYLNIE--PKTGFKINISSKI----PISCGLGSSASITIGTIKAV-SGFYNK--ELKDDEIAKLGYMVEKEIQGKASITDTSTITYKGILEIKN-----NKFRKIKGEFEEFLKNCKFLI-------------VYAEKRKKKTAELVNEVAKIENKD----EIF----KEIDKVIDEALKIKNKEDFGKLMTKNHELLKKL------NISTPKLDRIVDIGNRFGFGAKLTGAGGGGCVI----------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VIS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -128655 for 2308 contacts (-55.7/contact) +
2D Compatibility (PS) -29903 + (NN) -12808 + (LL) 6268
1D Compatibility (HY) -17600 + (ID) 4100
Total energy: -186798.0 ( -80.94 by residue)
QMean score : 0.495
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