Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LEKKKKFRLFDAVLMAVCVVLVVESAAPAAAIGSSQFFWWIALLILFFLPYGLVSAELGTTYDDEGGIYDWVKRAFGRKWGARVAWLYWINYPIWMASLAVLFVEVITQIFPVSFGTPVSILIQLIFVWIVVIVSCYPVSDSKWILNIAAFCKVAIML---CLGVLGIYFAITKGLANDFSGKALLPTFDLESL-------SFISVILFNFLGFEVVTTLASDMENPKKQIPQAIIYGGILIAFFYLLAAFGMGAAIPTSELSTSGG-LIDSFIMLIGGVNPFVIIIGIMFMYTLVANLVSWALGVNYVAMYAAKNKDLPAVFGKTNPKNDMPTGTSILNGIVASVLIVAAPLIPN-ENIFWAFFALNVVALLGSYILMFPAFLKLRKLDPDRERPFKVPGGKILLYLMTFVPMILLIITLIFSAVPLNGSSAELNEKIPILIGTIVAVIVGEICIWLAGKRKDKGEIKNEND |
| 3NCY Chain:A ((36-406)) | -----------------------------AATGGIAIYGWL-VTIIGALALSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTLTCVAVLWIFVLLN---IVGPKMITRVQAVATVLALVPIVGIAVFGWFW---------FKGE-----WNVSGMNTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALG--DTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFAR------TPVAGLLIVGVLMTIFQFSS-MSPNAAKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARP--------LYLLITFVAFVYCIWAVIGSG------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NCY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -392583 for 2912 contacts (-134.8/contact) +
2D Compatibility (PS) -36122 + (NN) -12237 + (LL) 7304
1D Compatibility (HY) -30800 + (ID) 4500
Total energy: -468938.0 ( -161.04 by residue)
QMean score : 0.308
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