Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGGRRGGRRRKKVCYFTSNGITHIDYKDVELLKKFVSERGKILPRRVTGTSAKYQRKLTVAIKRSRQMALLPFVAEEK
2YKR Chain:R ((20-70))
------------------------IDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYT----
General information:
TITO was launched using:
RESULT:
Template:
2YKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16169 for 340 contacts (-47.6/contact) +
2D Compatibility (PS) -5162 + (NN) 65 + (LL) 1252
1D Compatibility (HY) -5200 + (ID) 1500
Total energy: -26714.0 ( -78.57 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_2YKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YKR-query.scw
PDB file :
Tito_Scwrl_2YKR.pdb
: