Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSGYFQKRMLKYPLYGLIAATIILSVITFFFSWWLSALVVVGGIILTVAMFYFEYRLNEDVQLYVSNLTYRIKRSEEEALVEMPMGILLYDEHYKIEWVNPFMSKYFDKAELIGESLEEVGPEFLDVITGNDEKGIMSIAWRDHRFDTIVKRKERILYLYDRTEYYDLNKKFQANKSVFAVIFLDNYDEWAQGMDDRRRSALNNLVTSMLTNWAREHRIYLKRISTDRFMAFLTEEMLKRLEEEKFQILDRIRERTSKQNIPLTLSIGIGYKEDDLIQLADLAQSSLDLALGRGGDQVVIKQPEGKVRFYGGKTNPMEKRTRVRARVISQALQELITQSDQVFVMGHRYPDMDVIGSSLGVMRIAEMNDRNAYVVVEPGKMSPDVKRLMNEIEEYPNVIKNIVTPQVALENITEKSLLVVVDTHKPSMVINK-----ELLDSATNVVVVDHHRRSEEFVGSPVLVYIEPYASSTAELITELFEY--QPDLEQVGKIEATALLSGIVVDTKNFTLRTGSRTFDAASYLRSLGADTILVQQFLKEDITTFTQRSRLVESLEIYHDGMAIATGHEDEEFGTVIAAQAADTMLSMEGVQASFVITLRPDKLIGISARSLGQINVQVIMEKLGGGGHLSNAATQLKDVTIAEAEKQLISAIDAYWKGET |
| 4LS9 Chain:A ((24-218)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARVDARGAADLLTAASSVSVICHVYPDADTIGAGLALAQVLAASGKH----VEVSFATP--AQLPESLQSLPGG-HLLVAPEAMRRD---ADLVVTVDI--PS--INRLGALSGLAGPGREVLVIDHHASNQLFGTA---NYIDPSADSTTMLVAELLDAWGKPIDEKV----AHCLYAGLTTDTGSFRWAT-ARAHRLAARLVELGVDNASISRTL--------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LS9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -93363 for 1626 contacts (-57.4/contact) +
2D Compatibility (PS) -19971 + (NN) -4918 + (LL) 38124
1D Compatibility (HY) -7200 + (ID) 3150
Total energy: -90478.0 ( -55.64 by residue)
QMean score : 0.505
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