Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKITAPRIPDGDLTVYPNDTYFIEDIGEVSEQIFRKTTLTGEIFEHFHLETIIFDGCVF------DSVSLVSANLTDVVFKNCDLSNLDLMGAIIHRVRFENCKLIGMNFSDATLRNCV-----FVDCYADYVAFRYANLKWVAFEA---------GAYT-NSDFSGAQLVDTYLERLDLNKAQFLNCALNGIDLSSCIFESITAMPQDLKGMSIDFSHAPALMPLFGIRVK
2XTW Chain:A ((30-210))
--------------------------------------------FSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWRAANFTHCDLTNSELGDLDIRGV-----DLQGVKLDNYQASLLMERLGI---
General information:
TITO was launched using:
RESULT:
Template:
2XTW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -189322 for 1236 contacts (-153.2/contact) +
2D Compatibility (PS) -16316 + (NN) 5465 + (LL) 3392
1D Compatibility (HY) -8800 + (ID) 2450
Total energy: -208031.0 ( -168.31 by residue)
QMean score : 0.226
(partial model without unconserved sides chains):
PDB file :
Tito_2XTW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XTW-query.scw
PDB file :
Tito_Scwrl_2XTW.pdb
: