Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSEFFSTLLLIIGLLIGFFLAILLILAGIRRFFCSAEEPLKRIRRYQVWHNRYQFNEEVTSFFTVIGATLLVSLITVQITAIPFQYTVLIFWSSWLFHLLSFWKKIRVPKKMKNEMIQLAG-FLLITALYFVGYFAMKSLHFSIIHVADFPGVIQFGIRTYLTICSLFVASGALIVWQRIYVKLLK
4APF Chain:A ((165-203))
---------------------------------------------------------------------------------------------------------RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLS-------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4APF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26107 for 189 contacts (-138.1/contact) +
2D Compatibility (PS) -3977 + (NN) -768 + (LL) 15492
1D Compatibility (HY) -3600 + (ID) 850
Total energy: -19810.0 ( -104.81 by residue)
QMean score : 0.220
(partial model without unconserved sides chains):
PDB file :
Tito_4APF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4APF-query.scw
PDB file :
Tito_Scwrl_4APF.pdb
: