Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVLVLPENKDINYIKTVQEVKRFFADFERFRMITGLSKKPHLLRNGFLEEPQFEPVAFSAR---HNKEVILEARWLVEKY-TEMLNQMDDLYRTILMECYVERKQDVAVMMDLPYEIAQFKRIKKRAVLELATLMGILVRK
2PP3 Chain:A ((73-156))
-----------------------------------------------------FEGVGFSYSKRAGGQGIYAHAKEIADNLLGEDPNDIDKIYTKLLWAGASVGRSGMAVQAISPIDIALWDMKAKRAGLPLAKLLG-----
General information:
TITO was launched using:
RESULT:
Template:
2PP3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13720 for 515 contacts (-26.6/contact) +
2D Compatibility (PS) -8313 + (NN) 587 + (LL) 5048
1D Compatibility (HY) -3600 + (ID) 1200
Total energy: -21198.0 ( -41.16 by residue)
QMean score : 0.339
(partial model without unconserved sides chains):
PDB file :
Tito_2PP3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PP3-query.scw
PDB file :
Tito_Scwrl_2PP3.pdb
: