Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKIVKMSEKNEHGTLEQFYPETHAEAVKGLVSVSEEEKTIWDQKESTAGAEQKANTALNSAKDYVDTIGEGTVIFKGANLMGAGQSFKWDASKLKFGMTLLFSRYDAANNTPQDYYYHSVFLSKAQLVELA--------GKGILVQMPSTTYGDRKYLYVSTTGLSGHFDNSNYAAWALRQVTIM |
3WNM Chain:A ((623-702)) | -------------------------------------------------------------------------------NLLGNDNQWRNTASQPSFQTNLPAKIYIGADETISDVYLASPDLSGGETQELAFTSGTDAGGKYVSFTVPELKYWNMIYM--------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3WNM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -12657 for 387 contacts (-32.7/contact) +
2D Compatibility (PS) -7148 + (NN) 948 + (LL) 7280
1D Compatibility (HY) -2800 + (ID) 1150
Total energy: -15527.0 ( -40.12 by residue)
QMean score : 0.102
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